| 1. |  | AC Sparta Praha | 819 | 507 | 173 | 139 | 1518 | 657 | +861 | 1676 |
| 2. |  | SK Slavia Praha | 819 | 429 | 215 | 175 | 1342 | 757 | +585 | 1486 |
| 3. |  | FC Slovan Liberec | 819 | 357 | 227 | 235 | 1105 | 881 | +224 | 1287 |
| 4. |  | FK Jablonec | 789 | 311 | 220 | 258 | 1067 | 918 | +149 | 1153 |
| 5. |  | FC Viktoria Plzeň | 699 | 330 | 169 | 200 | 1037 | 771 | +266 | 1147 |
| 6. |  | SK Sigma Olomouc | 755 | 291 | 209 | 255 | 958 | 869 | +89 | 1068 |
| 7. |  | FC Baník Ostrava | 790 | 270 | 232 | 288 | 1013 | 1003 | +10 | 1028 |
| 8. |  | FK Teplice | 725 | 267 | 214 | 244 | 912 | 860 | +52 | 1015 |
| 9. |  | FC Zbrojovka Brno | 720 | 242 | 186 | 292 | 840 | 948 | -108 | 902 |
| 10. |  | FK Mladá Boleslav | 488 | 204 | 129 | 155 | 738 | 620 | +118 | 741 |
| 11. |  | 1.FK Příbram | 638 | 186 | 162 | 290 | 671 | 921 | -250 | 720 |
| 12. |  | 1.FC Slovácko | 547 | 173 | 149 | 225 | 605 | 690 | -85 | 668 |
| 13. |  | SK Dynamo České Budějovice | 572 | 164 | 157 | 251 | 598 | 847 | -249 | 638 |
| 14. |  | Bohemians Praha 1905 | 548 | 152 | 155 | 241 | 538 | 753 | -215 | 603 |
| 15. |  | FK Viktoria Žižkov | 420 | 144 | 106 | 170 | 478 | 539 | -61 | 526 |
| 16. |  | FC Fastav Zlín | 457 | 133 | 122 | 202 | 438 | 620 | -182 | 511 |
| 17. |  | FC Hradec Králové | 420 | 105 | 113 | 202 | 374 | 601 | -227 | 419 |
| 18. |  | FK Drnovice | 300 | 114 | 67 | 119 | 392 | 398 | -6 | 396 |
| 19. |  | Slezský FC Opava | 308 | 80 | 81 | 147 | 324 | 461 | -137 | 321 |
| 20. |  | FK Dukla Praha | 275 | 77 | 76 | 122 | 325 | 420 | -95 | 306 |
| 21. |  | FK Chmel Blšany | 240 | 67 | 63 | 110 | 255 | 350 | -95 | 264 |
| 22. |  | FC Vysočina Jihlava | 210 | 55 | 61 | 94 | 221 | 315 | -94 | 226 |
| 23. |  | MFK Karviná | 128 | 30 | 33 | 65 | 138 | 193 | -55 | 123 |
| 24. |  | SK Kladno | 120 | 28 | 30 | 62 | 99 | 173 | -74 | 114 |
| 25. |  | FC Union Cheb | 90 | 29 | 26 | 35 | 95 | 121 | -26 | 100 |
| 26. |  | FK SIAD Most | 90 | 19 | 30 | 41 | 96 | 140 | -44 | 87 |
| 27. |  | FK Bohemians Praha | 60 | 14 | 8 | 38 | 60 | 111 | -51 | 50 |
| 28. |  | FC Karviná | 60 | 12 | 12 | 36 | 53 | 105 | -52 | 48 |
| 29. |  | 1.SC Znojmo FK | 30 | 6 | 9 | 15 | 32 | 49 | -17 | 27 |
| 30. |  | FK Ústí nad Labem | 30 | 4 | 7 | 19 | 22 | 67 | -45 | 19 |
| 31. |  | FC JOKO Slovácká Slavia Uherské Hradiště | 30 | 3 | 8 | 19 | 19 | 65 | -46 | 17 |
| 32. |  | MFK Vítkovice | 30 | 3 | 7 | 20 | 22 | 64 | -42 | 13 |
| 33. |  | FK ŠVARC Benešov | 30 | 3 | 3 | 24 | 23 | 78 | -55 | 12 |
| 34. |  | AFK Atl. Lázně Bohdaneč | 30 | 2 | 5 | 23 | 18 | 61 | -43 | 11 |
